what does the function getResnum() from prody?
Question
what does the function getResnum() from prody?
Solution
The getResnum() function from ProDy, a Python package for protein structure, dynamics, and function analysis, is used to get the residue numbers from a given atomic or ensemble instance.
Here's a step-by-step explanation:
- Import the necessary ProDy modules:
from prody import *
- Parse a PDB file to get an atomic instance:
pdb = parsePDB('pdb file path')
- Use the
getResnum()function to get the residue numbers:
resnums = pdb.getResnum()
In this case, resnums will be a numpy array containing the residue numbers of all atoms in the atomic instance.
Please note that the residue numbers are assigned based on the PDB file, so they may not always start from 1 or be continuous.
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