Use the packages “survival” and "survminer" in RStudio to answer the following three questions. See Question 3 in Practice sheet 4 for details on how to use the above packages to analyse the data. You need to setup up the above data in a csv file (suggest that enter the data in an Excel file in the correct format (with column 1 name as “status” and column 2 name as “time”) and save it as “csv” file.The following data gives the lifetimes (in operating hours) of 23 identical components. The measurements with `*’ indicate suspensions.8.0, 21.3, 25.5, 8.1, 4.5, 4.2, 13.2, 9.9, 11.9*, 27.0, 25.7, 25.8, 28.6, 12.5, 6.0, 19.9, 8.0*, 8.6, 14.5*, 32.9, 15.5, 3.4, 18.2Calculate the Kaplan-Meier estimate of R(20). Give your answer to 3 decimal place accuracy.
Question
Use the packages “survival” and "survminer" in RStudio to answer the following three questions. See Question 3 in Practice sheet 4 for details on how to use the above packages to analyse the data. You need to setup up the above data in a csv file (suggest that enter the data in an Excel file in the correct format (with column 1 name as “status” and column 2 name as “time”) and save it as “csv” file.The following data gives the lifetimes (in operating hours) of 23 identical components. The measurements with `’ indicate suspensions.8.0, 21.3, 25.5, 8.1, 4.5, 4.2, 13.2, 9.9, 11.9, 27.0, 25.7, 25.8, 28.6, 12.5, 6.0, 19.9, 8.0*, 8.6, 14.5*, 32.9, 15.5, 3.4, 18.2Calculate the Kaplan-Meier estimate of R(20). Give your answer to 3 decimal place accuracy.
Solution
To calculate the Kaplan-Meier estimate of R(20) using the "survival" and "survminer" packages in RStudio, follow these steps:
- First, prepare your data. Create a CSV file with two columns: "status" and "time". The "status" column should indicate whether the observation is a failure (1) or a suspension (0). The "time" column should contain the lifetimes of the components. For example, your data might look like this:
status,time
1,8.0
1,21.3
1,25.5
1,8.1
1,4.5
1,4.2
1,13.2
1,9.9
0,11.9
1,27.0
1,25.7
1,25.8
1,28.6
1,12.5
1,6.0
1,19.9
0,8.0
1,8.6
0,14.5
1,32.9
1,15.5
1,3.4
1,18.2
- Load your data into RStudio:
data <- read.csv("yourdata.csv")
- Load the "survival" and "survminer" packages:
library(survival)
library(survminer)
- Create a survival object using the Surv() function:
s <- Surv(data$time, data$status)
- Fit a Kaplan-Meier survival curve using the survfit() function:
fit <- survfit(s ~ 1)
- The Kaplan-Meier estimate of R(20) is the survival probability at time 20. You can extract this value from the fitted survival curve:
R20 <- summary(fit)$surv[summary(fit)$time == 20]
- Print the result:
print(round(R20, 3))
This will give you the Kaplan-Meier estimate of R(20) to 3 decimal places. Note that if there is no exact match for time 20 in your data, R will interpolate between the closest times to give an estimate.
Similar Questions
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